Genes pdf download

Genes pdf download

genes pdf download

areas in genetics and molecular biology include viruses Portions of the DNA sequences of normal and mutant b-globin genes are shown above. The most. Highlights. •. CRISPR/Cas9-mediated simultaneous targeting of multiple genes in monkey embryos Download.pdf .61 MB) · Help with pdf. Search for Human Genes Download. GRCh38, GRCh37 genetic variation on human health · RefSeqGene Gene-focused genomic reference standard sequences that support reporting sequence variation Fact Sheets to Download (PDF).

RNA-binding proteins in human genetic disease

Abstract

RNA-binding proteins (RBPs) are critical effectors of gene expression, and as such their malfunction underlies the origin of many diseases. RBPs can recognize hundreds of transcripts and form extensive regulatory networks that help to maintain cell homeostasis. System-wide unbiased identification of RBPs has increased the number of recognized RBPs into the four-digit range and revealed new paradigms: from the prevalence of structurally disordered RNA-binding regions with roles in the formation of membraneless organelles to unsuspected and potentially pervasive connections between intermediary metabolism and RNA regulation. Together with an increasingly detailed understanding of molecular mechanisms of RBP function, these insights are facilitating the development of new therapies to treat malignancies. Here, we provide an overview of RBPs involved in human genetic disorders, both Mendelian and somatic, and discuss emerging aspects in the field with emphasis on molecular mechanisms of disease and therapeutic interventions.

Access options

Subscribe to Journal

Get full journal access for 1 year

55,14 €

only 4,60 € per issue

All prices are NET prices.
VAT will be added later in the checkout.

Rent or Buy article

Get time limited or full article access on ReadCube.

from$8.99

All prices are NET prices.

Data availability

The data that support the findings of this study are available as Supplementary Tables and in RBPbase: https://rbpbase.shiny.embl.de/.

Code availability

The source code used in this paper and written by T.S. is publicly available at http://www.hentze.embl.de/public/hRBPdiseases/.

References

  1. 1.

    Mitchell, S. F. & Parker, R. Principles and properties of eukaryotic mRNPs. Mol. Cell54, 547–558 (2014).

    CASPubMedArticle Google Scholar

  2. 2.

    Gerstberger, S., Hafner, M. & Tuschl, T. A census of human RNA-binding proteins. Nat. Rev. Genet.15, 829–845 (2014).

    CASPubMedArticle Google Scholar

  3. 3.

    Singh, G., Pratt, G., Yeo, G. W. & Moore, M. J. The clothes make the mRNA: past and present trends in mRNP fashion. Annu. Rev. Biochem.84, 325–354 (2015).

    CASPubMedPubMed CentralArticle Google Scholar

  4. 4.

    Hentze, M. W., Castello, A., Schwarzl, T. & Preiss, T. A brave new world of RNA-binding proteins. Nat. Rev. Mol. Cell Biol.19, 327–341 (2018).

    CASPubMedArticle Google Scholar

  5. 5.

    Bou-Nader, C., Gordon, J. M., Henderson, F. E. & Zhang, J. The search for a PKR code-differential regulation of protein kinase R activity by diverse RNA and protein regulators. RNA25, 539–556 (2019).

    CASPubMedPubMed CentralArticle Google Scholar

  6. 6.

    Castello, A. et al. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell149, 1393–1406 (2012). This is one of two pioneer studies reporting the unbiased identification of RBPs, performed in HeLa cells.

    CASPubMedArticle Google Scholar

  7. 7.

    Baltz, A. G. et al. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell46, 674–690 (2012). This is one of two pioneer studies reporting the unbiased identification of RBPs, performed in HEK293 cells.

    CASPubMedArticle Google Scholar

  8. 8.

    Castello, A. et al. Comprehensive identification of RNA-binding domains in human cells. Mol. Cell63, 696–710 (2016). This article describes RBDmap, a method for the high-throughput identification of RBDs within RBPs. Peptides adjacent to the actual RNA-binding residues are identified.

    CASPubMedPubMed CentralArticle Google Scholar

  9. 9.

    Beckmann, B. M. et al. The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs. Nat. Commun.6, 10127 (2015).

    CASPubMedPubMed CentralArticle Google Scholar

  10. 10.

    Piqué, M., López, J. M., Foissac, S., Guigó, R. & Méndez, R. A combinatorial code for CPE-mediated translational control. Cell132, 434–448 (2008).

    PubMedArticleCAS Google Scholar

  11. 11.

    Iadevaia, V. & Gerber, A. P. Combinatorial control of mRNA fates by RNA-binding proteins and non-coding RNAs. Biomolecules5, 2207–2222 (2015).

    CASPubMedPubMed CentralArticle Google Scholar

  12. 12.

    Achsel, T. & Bagni, C. Cooperativity in RNA–protein interactions: the complex is more than the sum of its partners. Curr. Opin. Neurobiol.39, 146–151 (2016).

    CASPubMedArticle Google Scholar

  13. 13.

    Beckmann, B. M., Castello, A. & Medenbach, J. The expanding universe of ribonucleoproteins: of novel RNA-binding proteins and unconventional interactions. Pflug. Arch.468, 1029–1040 (2016).

    CASArticle Google Scholar

  14. 14.

    Morris, A. R., Mukherjee, N. & Keene, J. D. Systematic analysis of posttranscriptional gene expression. Wiley Interdiscip. Rev. Syst. Biol. Med.2, 162–180 (2010).

    CASPubMedArticle Google Scholar

  15. 15.

    Imig, J., Kanitz, A. & Gerber, A. P. RNA regulons and the RNA–protein interaction network. Biomol. Concepts3, 403–414 (2012).

    CASPubMedArticle Google Scholar

  16. 16.

    Castello, A., Fischer, B., Hentze, M. W. & Preiss, T. RNA-binding proteins in Mendelian disease. Trends Genet.29, 318–327 (2013).

    CASPubMedArticle Google Scholar

  17. 17.

    Gerstberger, S., Hafner, M., Ascano, M. & Tuschl, T. Evolutionary conservation and expression of human RNA-binding proteins and their role in human genetic disease. Adv. Exp. Med. Biol.825, 1–55 (2014).

    CASPubMedPubMed CentralArticle Google Scholar

  18. 18.

    De Conti, L., Baralle, M. & Buratti, E. Neurodegeneration and RNA-binding proteins. Wiley Interdiscip. Rev. RNA8, e1394 (2017).

    ArticleCAS Google Scholar

  19. 19.

    Conlon, E. G. & Manley, J. L. RNA-binding proteins in neurodegeneration: mechanisms in aggregate. Genes Dev.31, 1509–1528 (2017).

    CASPubMedPubMed CentralArticle Google Scholar

  20. 20.

    Garcia-Moreno, M. et al. System-wide profiling of RNA-binding proteins uncovers key regulators of virus infection. Mol. Cell74, 196–211 (2019).

    CASPubMedPubMed CentralArticle Google Scholar

  21. 21.

    Perez-Perri, J. I. et al. Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture. Nat. Commun.9, 4408 (2018).

    PubMedPubMed CentralArticleCAS Google Scholar

  22. 22.

    Backlund, M. et al. Plasticity of nuclear and cytoplasmic stress responses of RNA-binding proteins. Nucleic Acids Res.48, 4725–4740 (2020).

    PubMedPubMed CentralArticle Google Scholar

  23. 23.

    Castello, A. et al. Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap. Nat. Protoc.12, 2447–2464 (2017).

    CASPubMedArticle Google Scholar

  24. 24.

    Mullari, M., Lyon, D., Jensen, L. J. & Nielsen, M. L. Specifying RNA-binding regions in proteins by peptide cross-linking and affinity purification. J. Proteome Res.16, 2762–2772 (2017).

    CASPubMedArticle Google Scholar

  25. 25.

    Conrad, T. et al. Serial interactome capture of the human cell nucleus. Nat. Commun.7, 11212 (2016).

    CASPubMedPubMed CentralArticle Google Scholar

  26. 26.

    Huang, R., Han, M., Meng, L. & Chen, X. Transcriptome-wide discovery of coding and noncoding RNA-binding proteins. Proc. Natl Acad. Sci. USA115, E3879–E3887 (2018).

    CASPubMedArticle Google Scholar

  27. 27.

    Bao, X. et al. Capturing the interactome of newly transcribed RNA. Nat. Methods15, 213–220 (2018).

    CASPubMedPubMed CentralArticle Google Scholar

  28. 28.

    Queiroz, R. M. L. et al. Comprehensive identification of RNA–protein interactions in any organism using orthogonal organic phase separation (OOPS). Nat. Biotechnol.37, 169–178 (2019).

    CASPubMedPubMed CentralArticle Google Scholar

  29. 29.

    Trendel, J. et al. The human RNA-binding proteome and its dynamics during translational arrest. Cell176, 391–403 (2019).

    CASPubMedArticle Google Scholar

  30. 30.

    Urdaneta, E. C. et al. Purification of cross-linked RNA–protein complexes by phenol–toluol extraction. Nat. Commun.10, 990 (2019).

    PubMedPubMed CentralArticleCAS Google Scholar

  31. 31.

    Kramer, K. et al. Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins. Nat. Methods11, 1064–1070 (2014). This article describes the first unbiased method to identify RNA-binding sites in RBPs.

    CASPubMedPubMed CentralArticle Google Scholar

  32. 32.

    Pashev, I. G., Dimitrov, S. I. & Angelov, D. Crosslinking proteins to nucleic acids by ultraviolet laser irradiation. Trends Biochem. Sci.16, 323–326 (1991).

    CASPubMedArticle Google Scholar

Источник: [https://torrent-igruha.org/3551-portal.html]

Genes pdf download

0 thoughts to “Genes pdf download”

Leave a Reply

Your email address will not be published. Required fields are marked *